Computational Genomics with R

Computational Genomics with R
Author :
Publisher : CRC Press
Total Pages : 463
Release :
ISBN-10 : 9781498781862
ISBN-13 : 1498781861
Rating : 4/5 (861 Downloads)

Book Synopsis Computational Genomics with R by : Altuna Akalin

Download or read book Computational Genomics with R written by Altuna Akalin and published by CRC Press. This book was released on 2020-12-16 with total page 463 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational Genomics with R provides a starting point for beginners in genomic data analysis and also guides more advanced practitioners to sophisticated data analysis techniques in genomics. The book covers topics from R programming, to machine learning and statistics, to the latest genomic data analysis techniques. The text provides accessible information and explanations, always with the genomics context in the background. This also contains practical and well-documented examples in R so readers can analyze their data by simply reusing the code presented. As the field of computational genomics is interdisciplinary, it requires different starting points for people with different backgrounds. For example, a biologist might skip sections on basic genome biology and start with R programming, whereas a computer scientist might want to start with genome biology. After reading: You will have the basics of R and be able to dive right into specialized uses of R for computational genomics such as using Bioconductor packages. You will be familiar with statistics, supervised and unsupervised learning techniques that are important in data modeling, and exploratory analysis of high-dimensional data. You will understand genomic intervals and operations on them that are used for tasks such as aligned read counting and genomic feature annotation. You will know the basics of processing and quality checking high-throughput sequencing data. You will be able to do sequence analysis, such as calculating GC content for parts of a genome or finding transcription factor binding sites. You will know about visualization techniques used in genomics, such as heatmaps, meta-gene plots, and genomic track visualization. You will be familiar with analysis of different high-throughput sequencing data sets, such as RNA-seq, ChIP-seq, and BS-seq. You will know basic techniques for integrating and interpreting multi-omics datasets. Altuna Akalin is a group leader and head of the Bioinformatics and Omics Data Science Platform at the Berlin Institute of Medical Systems Biology, Max Delbrück Center, Berlin. He has been developing computational methods for analyzing and integrating large-scale genomics data sets since 2002. He has published an extensive body of work in this area. The framework for this book grew out of the yearly computational genomics courses he has been organizing and teaching since 2015.


Computational Genomics with R Related Books

Computational Genomics with R
Language: en
Pages: 463
Authors: Altuna Akalin
Categories: Mathematics
Type: BOOK - Published: 2020-12-16 - Publisher: CRC Press

DOWNLOAD EBOOK

Computational Genomics with R provides a starting point for beginners in genomic data analysis and also guides more advanced practitioners to sophisticated data
Large-Scale Group Decision-Making
Language: en
Pages: 195
Authors: Su-Min Yu
Categories: Business & Economics
Type: BOOK - Published: 2022-01-03 - Publisher: Springer Nature

DOWNLOAD EBOOK

This book explores clustering operations in the context of social networks and consensus-reaching paths that take into account non-cooperative behaviors. This b
Machine Learning and Data Mining in Pattern Recognition
Language: en
Pages: 452
Authors: Petra Perner
Categories: Computers
Type: BOOK - Published: 2003-06-25 - Publisher: Springer Science & Business Media

DOWNLOAD EBOOK

TheInternationalConferenceonMachineLearningandDataMining(MLDM)is the third meeting in a series of biennial events, which started in 1999, organized by the Insti
Similarity-Based Clustering
Language: en
Pages: 211
Authors: Thomas Villmann
Categories: Computers
Type: BOOK - Published: 2009-06-02 - Publisher: Springer Science & Business Media

DOWNLOAD EBOOK

This book is the outcome of the Dagstuhl Seminar on "Similarity-Based Clustering" held at Dagstuhl Castle, Germany, in Spring 2007. In three chapters, the three
Grouping Multidimensional Data
Language: en
Pages: 296
Authors: Jacob Kogan
Categories: Computers
Type: BOOK - Published: 2006-02-10 - Publisher: Taylor & Francis

DOWNLOAD EBOOK

Publisher description